Bioinformatics 101 tool for counting unique k-length substrings in DNA

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

Count kmers with a more efficient (faster) hash table

k-mer similarity analysis pipeline

fast and comprehensive k-mer counting package

Very large scale k-mer counting and analysis on Apache Spark.

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

🧮 🔢 Generate multi-sample k-mer count matrix from WGS

K-mer counting algorithms and count-data utilities for the BioJulia framework

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

Pangenome openness from k-mers or genes

DNA classifier using Natural Language Processing. Used K-mer method to convert sequence strings into fixed size words

A seed-based homology searching tool

Represents sequences files in fasta format in terms of their kmer counts.

Minimizer counting and analysis

Counting Bloom Filter Algorithm to count kmers

This is the Machine learning Project Repo.

fast and lightweight counting of short k-mers

Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.