Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
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Sep 8, 2022 - R
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lineage-tracing
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TarCA is an R package used for inferring the number of progenitors of the focal cell population based on the cell phylogeny.
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Feb 29, 2024 - R
Analyses of Penter, Borji & Nagler et al., Nature Communications 2024
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Aug 27, 2024 - R
Here, we publish all scripts to reproduce the analyses in the manuscript Sciphy: A Bayesian phylogenetic framework using sequential genetic lineage tracing data
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Aug 9, 2025 - R
Haplotype-aware CNV analysis from single-cell RNA-seq
cancer-genomics single-cell phylogeny single-cell-rna-seq single-cell-analysis cnv-detection spatial-transcriptomics lineage-tracing
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Oct 22, 2025 - R
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