Haplotype-aware CNV analysis from single-cell RNA-seq
Here, we publish all scripts to reproduce the analyses in the manuscript Sciphy: A Bayesian phylogenetic framework using sequential genetic lineage tracing data
Analyses of Penter, Borji & Nagler et al., Nature Communications 2024
TarCA is an R package used for inferring the number of progenitors of the focal cell population based on the cell phylogeny.
Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
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