Emory BMI GSoC Project Ideas

Supporting code for the GX Dataset

Neuromodulatory Control Networks (NCNs), a novel LLM architectural modification inspired by the neuromodulatory systems in the vertebrate brain.

Multidigraph learning (MDGL) for training recurrent spiking neural networks

Python port of the PARRM algorithm for removing periodic artefacts from signals.

Image-to-image deep learning framework for MRI to porosity map translation

Python implementation of the NICE & SONIC models for multiple neuron types, along with command-line scripts for rapid simulations.

ANML: A Neuromodulated Meta-Learning algorithm (using the `higher` framework)

Python+NEURON framework enabling the creation of morphologically-structured neuron models incorporating the SONIC paradigm.

This repository contains code to analyze widefield cortical imaging data. Types of analysis include estimation of convolution kernels, regression, and functional connectivity analysis. Published datasets can be found at

Python scripts & notebooks to generate the data & figures of the SONIC paper (Lemaire et al. 2019).

Python scripts to generate the data and figures of the morphoSONIC paper by Lemaire et al. (2021).

Code used to generate the results in "A unified model library maps how neuromodulation reshapes the excitability landscape of neurons across the brain"

Synaptic vesicle fusion model (Church et al 2021)

A repository implementing a biologically inspired spiking neural network for psychological profiling. This project uses my own "QLIF-Neurons" by incorporating feedback and cross‐connections among key brain regions (e.g., prefrontal cortex, amygdala, hippocampus, thalamus, and striatum) and integrates text‐based emotion analysis.

2nd place submission in the closeNIT closed-loop neuromodulation hackathon

Python program for tracking and recording power input to ultrasonic neuromodulation system using PicoScope® 5000 Series

Simulations of modulation of HCN channels in L5PCs (Mäki-Marttunen and Mäki-Marttunen accepted)

Wiki for the neuromodulation platform at the Fondation Campus Biotech Geneva.

Python module for interfacing with a tVNS-R stimulator.