A short exercise mapping MIMIC.DIAGNOSES_ICD table to the OMOP.CONDITION_OCCURRENCE table.

core of pymedext source

Makes a list of what archetypes are covoered by a OMOCL repo and which not

SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.

Docker image of a SQL Server-based instance of the OMOP Common Data Model

Boilerplate docs for other OMOP implementers.

Script to convert OMOP NOTE table to NOTE_NLP table

Helm Chart for Connecting Atlas to Intersystems OMOP Platform

Facilitate the linkage of OMOP CDM databases from different sources

Multi-agent ontology auto enrichment framework

Part of OMOP NHSO TCELS project

This repo contains analysis performed for paper "A comparative patient-level prediction study in OMOP CDM – insights from study on synthetic data".

Notebooks and scripts for querying programmatically source and OMOP data

Apply CQL libraries to OMOP databases

A tool for backing up OHDSI WebAPI cohorts in a git repository

OMOP CDM query assistant

📓 .Net library for OMOP CDM management

A documentation-centric DuckDB based ETL tool, implementing transformations of a number of common clinical datasets into the OMOP CDM.

This pilot project deploys a supplemental OMOP table to map external measures of rurality (RUCC and RUCA).