A modular genomic toolkit focused on automated primer design, sequence validation, and workflow orchestration. Built for reliability, reproducibility, and scalable bioinformatics workflows.

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

《Princess Connect Re:Dive》AndroidApp辅助工具

Sanger Trace Viewer

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files

Comprehensive Web Platform for PCR Design, Quantitative PCR, Genotyping, LAMP, Gibson Assembly, Multiplex Tiling PCR panel design, and Repeat Analysis

Sanger Trace Alignment

Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

Patching references via trace assemblies

In-silico PCR amplification on complete genomes

BreastDCEDL is a deep learning–ready DCE-MRI dataset of 2,070 breast cancer patients, sourced from I-SPY1, I-SPY2 and the DUKE cohort.

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

Acconeer Exploration Tool

A scalable tool for accurate PCR amplicon prediction from microbiome samples using degenerate primers.

Fast, parallel in-silico PCR tool written in Go. Supports gzipped FASTA, primer files or inline primers, and multiple output formats.

PCR Primer Quality Control

Optimise PCR primer-set grouping for genetics research

公主连结Re:Dive 中文输入法词库。