🎄Visualization and annotation of phylogenetic trees

🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data

rtrees: an R package to assemble phylogenetic trees from mega-trees

Calculate distances between phylogenetic trees in R

Create, modify and analyse phylogenetic trees in R

Detection of outlier genes and species in phylogenomics

The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package

🌳👨 An R package for manipulating phylogentic trees

A simple treeviewer based on the R packages ape and phangorn.

PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.

Repository for the R nLTT package

Tumour clone trees for subclonal deconvolution from bulk sequencing data

A workshop to learn reactive visualization

Script for detecting signals of introgression in large set of gene trees from unlinked markers

AstralPlane: R Package For Preparing, Running, Analyzing and Plotting from the Species Tree Program ASTRAL-III

COVID-19 mortality risk assessment among various age groups using phylogenomic analysis

Tumour mutation trees for subclonal deconvolution from bulk sequencing data

SpeciesTopoTestR: Likelihood-based hypothesis tests of species topologies in R

Docker and Apptainer setup for the BEAST 2 software