Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide
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Jul 26, 2019 - Python
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pileup
Here are 11 public repositories matching this topic...
A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.
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Mar 9, 2023 - Python
Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
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Sep 24, 2023 - Python
Convert output from Samtools pileup into a matrix.
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Nov 2, 2023 - Java
PYTHIA files for simulating pp collisions at LHC energies with pileup
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Aug 2, 2024 - C++
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
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Oct 31, 2024 - Python
A lua package for designing DNA.
go bioinformatics synthetic-biology computational-biology sam genbank fasta fastq molecular-biology synbio rna-folding goldengate dna-barcode plasmids codon-optimization codon-usage pileup genetic-engineering dna-folding
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Dec 30, 2025 - Go
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