Very basic Snakemake workflow
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Sep 9, 2020 - Python
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plink2
Here are 11 public repositories matching this topic...
matrix haplotypes pca dnanexus 1000genomes haplotype plink2 haplotype-clustering arg-needle biohackathon-cmu-2025
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May 2, 2025 - Jupyter Notebook
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May 27, 2025 - JavaScript
A graphical user interface for PLINK 2.0, built with NiceGUI — open-source genetics toolkit by Carigenetics.
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Aug 20, 2025 - Python
gwas workflow from raw intensity data to in-silico functional mapping
gwas plink imputation meta-analysis illumina phasing emmax heritability fine-mapping saige haplotype genotype-imputation plink2 gencall idat-to-vcf idat2vcf functional-gwas bolt-lmm
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Jun 23, 2025 - Shell
Interactive visualization of population genetics data for ~10,000 modern and ancient individuals.
python heroku bioinformatics pca-analysis bokeh population-genetics umap bokeh-server admixtools plink2
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Nov 5, 2022 - Python
LocusZoom in Jupyter notebooks
bioinformatics gwas jupyter genetics plink jupyterlab locuszoom jupyterlab-extension plink2 genome-wide-association-studies
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Jul 20, 2023 - TypeScript
An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data
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Apr 6, 2023 - R
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