renamecontigs

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raymondkiu / bioinformatics-tools

Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix and suffix) etc

bioinformatics genome rename-files contigs genome-size extract-sequences bioinformatics-tool fasta-files genomeassembly renamecontigs extractcontigs assemblystatistics

Updated Oct 21, 2025
Shell

raymondkiu / sequence-stats

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Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA. Written in Bash. All in one place.

bioinformatics tools fasta fastq genome-assembly awk-script fastq2fasta assembly-stats renamecontigs extract-contigs filter-contigs-by-length

Updated Oct 9, 2025
Shell

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