#
resistome
Here are 5 public repositories matching this topic...
Bacterial analysis toolbox for full ESKAPEE pathogen characterisation and profiling the resistome, mobilome, virulome & phylogenomics using WGS
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Sep 28, 2020 - Shell
A WDL-based workflow for profiling Klebsiella & E. coli genomes using Kleborate. Supports local execution with Cromwell both local & cloud deployment in Terra, enabling automated analysis of assemblies with docker & integration with Terra data tables for scalable genomic surveillance.
microbial-genomics cromwell escherichia-coli resistome virulome genomic-surveillance kleborate klebsiella-species wdl-based-workflow
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Aug 10, 2025 - Shell
Mapping, snps calling, phylogeny
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Oct 2, 2019 - Shell
A number of pipelines that are managed by Gnu Make for conducting various analyses on high-throughput NGS
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Aug 12, 2020 - Shell
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