shiny app for WGCNA...

This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.

A reproducible RNA-seq analysis pipeline built with Snakemake, supporting QC, alignment, quantification, and differential expression.

Scripts developed during my master’s program for RNA-seq analysis.

Code for Cornel et al., Submitted (2023)

This project was conducted for the Stanford BioHacks hackathon.

RNA Sequencing Data Analysis for Beginners

Custom workflow for analysis of RNAseq data

IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context

RNAlytics: A Shiny-based web application for RNA-Seq analysis, offering differential expression, KEGG/GO enrichment, and interactive visualizations (PCA, Volcano, Heatmap, Gene Count). Built with R 4.4.3, it provides a user-friendly platform for researchers to explore genomic data. Deployable on Shiny Server for full control and scalability.

Set of classes, codes and scripts which I use for Omics data analysis

This repository includes scripts for RNAseq analysis

This GitHub repo supports a project, led by Delphine Galiana. It explores the innate immune response to viral infections, focusing on the role of plasmacytoid dendritic cells (pDCs) and the impact of alternative splicing in their antiviral response.

nf-pipeline template for custom data analysis, renders report