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sciworkflows

Here are 13 public repositories matching this topic...

kinow / wrf-sandbox

python workflow scheduler climate-model wrf cylc sciworkflows weather-model

Updated Nov 3, 2019

nikostr / dna-seq-deepvariant-glnexus-variant-calling

A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.

snakemake reproducibility deepvariant sciworkflows genomic-variant-calling

Updated Jun 30, 2021
Python

snakemake-workflows / dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

snakemake gatk reproducibility sciworkflows genomic-variant-calling

Updated Jun 8, 2023
Python

akcorut / kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

workflow bioinformatics gwas snakemake pipeline genomics ngs conda bioinformatics-pipeline structural-variation gwas-pipeline bioinformatics-tool gwas-tools kmers sciworkflows association-mapping

Updated Apr 18, 2024
Python

snakemake-workflows / rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

snakemake deseq2 reproducibility sciworkflows gene-expression-analysis

Updated Dec 18, 2025
Python

common-workflow-language

common-workflow-language / common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

science workflow containers common-workflow-language cwl workflows commonwl sciworkflows

Updated Jan 8, 2026
Common Workflow Language

snakemake-workflows / rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

rna-seq snakemake reproducibility kallisto differential-expression sleuth sciworkflows

Updated Mar 19, 2026
Python

cwltool

common-workflow-language / cwltool

Common Workflow Language reference implementation

science containers common-workflow-language cwl workflows commonwl sciworkflows

Updated Apr 10, 2026
Python

nodrogluap / tamor

Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake

bioinformatics-pipeline cancer-genomics mutation-analysis sciworkflows ruo pcgr dragen

Updated Apr 7, 2026
Python

tomarovsky / BuscoClade

Snakemake workflow to construct species phylogenies using BUSCOs

snakemake phylogenomics busco sciworkflows

Updated Apr 9, 2026
Python

fairagro / commonwl

Rust Libraries for Common Workflow Language (CWL)

rust workflow common-workflow-language cwl rdm commonwl sciworkflows sciwin

Updated Apr 10, 2026
Rust

fairagro / sciwin

🦀 SciWIn: Reproducible computational Workflows made easy!

rust science workflow automation common-workflow-language cwl rdm commonwl sciworkflows fairagro sciwin

Updated Apr 10, 2026
Rust

snakemake-workflows / dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

snakemake reproducibility sciworkflows varlociraptor genomic-variant-calling

Updated Apr 10, 2026
Python

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