An RNA virus strain-level identification tool for short reads.

bacterial strain identification

Python 2D Digital Image Correlation (DIC) Software

Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

Script for calculating CDP values (strain rate and temperature dependant) using FIB2010 and CEB

⚡🧠A finite element Python implementation

Planetary crustal and mantle properties, and lithospheric displacements, stress and strain, calculations in spherical harmonics.

Metabolic Engineering Workbench

The scripts developed here were created for my personal PhD project for exploring the effect of strain on the superconducting critical temperature

GAN/convolutional and Transformer models to predict missing mechanical information given limited known data in part of the domain, and further characterize the composite geometries from the recovered mechanical fields for 2D and 3D complex microstructures

Abaqus script to compute Green strain from Nominal strain

Deforming crystal (lagrangian strain) for VASP

A Schrödinger-Poisson solver for 2D materials with 1D interfaces (wires)

Abaqus CAE plugin to calculate Solidworks equivalent strain for each frame from the currently displayed odb

This repository is a pythonic solution to the 'GPS and infinitesimal strain analysis' method, published by Phil Resor and Vince Cronin. The non-pythonic method may be found on the SERC website under the GETSI teaching materials.

Strain relaxation from a TEM foil using FEM

A pipeline for our research workflow.

Calculation of thermal conductivity of graphene knot under strain

new type of 3D carbon structure

Generates an Abaqus simulation batch describing a cracked half-plane, and outputs the J-integral