Skip to content
View trissim's full-sized avatar

Highlights

  • Pro

Block or report trissim

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Starred repositories

Showing results

A Python library for reactive programming (with kind-of working type narrowing).

Python 68 3 Updated Jul 23, 2025

native Python dataclasses for the OME data model

Python 65 9 Updated Dec 15, 2025

Simple, fast-loading, n-dimensional array viewer with minimal dependencies.

Python 87 10 Updated Dec 15, 2025

Jupyter notebooks in the terminal

Python 2,361 53 Updated Dec 16, 2025

image processing spreadsheet

C 64 2 Updated Dec 19, 2025

Context-Engine: MCP retrieval stack for AI coding assistants. Hybrid code search (dense + lexical + reranker), ReFRAG micro-chunking, local LLM prompt enhancement, and dual SSE/RMCP endpoints. One …

Python 134 14 Updated Dec 19, 2025
Python 1 Updated Mar 12, 2021

This repository contains all data, code and report.

Jupyter Notebook 1 Updated Dec 5, 2020

Neuron Image Analyzer: Automated and Accurate Extraction of Neuronal Data from Low Quality Images

MATLAB 2 1 Updated Aug 3, 2016

Experimental wrapper for Spotify API to search songs and control the web player using the cli (Feat. Puppeteer)

JavaScript 109 9 Updated Jul 30, 2021

Software for high throughput detection and tracking of migrating neurons and neurites in live cell imaging

C 2 2 Updated Jul 6, 2017

Autofocus by live infra-red brightfield image cross correlation

Java 3 Updated Dec 17, 2025

Arduino-based microscope autofocus control

C++ 15 1 Updated Sep 18, 2023
Python 11 1 Updated Jan 17, 2025

A Python framework for program synthesis with a focus on Automated Machine Learning.

Python 213 66 Updated May 30, 2025

A framework for reconstructing neuronal morphology from optical microscopy images

C++ 4 1 Updated Jul 25, 2024

Roots is a package designed to take experimentally determined morphometric data and return an artificial neuronal arbor which satisfies the user-defined parameters.

Python 5 3 Updated May 30, 2021

A Python package for feature extraction of neural morphologies

Python 45 11 Updated Oct 20, 2025

Development of AMS at BMSTU

Jupyter Notebook 1 Updated Mar 13, 2019

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

Jupyter Notebook 621 141 Updated Dec 8, 2025

Reconstruction of multiple spline with variable number of control points

Python 25 4 Updated Aug 31, 2020

Robust Autofocus Score Prediction of SEM on Magnification Based on Deep Learning System, M&M'20.

Python 6 1 Updated May 8, 2020

Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"

Python 44 6 Updated Jul 22, 2025

A machine learning approach for defining contrast for autofocus.

Jupyter Notebook 22 Updated Aug 7, 2020

Code for the PyTorch implementation of "Spatially-Variant CNN-based Point Spread Function Estimation for Blind Deconvolution and Depth Estimation in Optical Microscopy", IEEE Transactions on Image …

Python 54 6 Updated Mar 29, 2021

Pytorch implementation of "DeepFocus: a Few-Shot Microscope Slide Auto-Focus using a Sample Invariant CNN-based Sharpness Function"

Python 23 4 Updated Jul 5, 2023

The personal information dashboard for your terminal

Go 16,499 833 Updated Dec 19, 2025

Exiting VIM is hard; sometimes we need to take drastic measures

Julia 1,241 14 Updated Feb 7, 2025

Finding paths of interest in networks

Go 3 2 Updated May 14, 2022
Next