Lists (7)
Starred repositories
Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse
Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data
Template repository for analysis of single-cell data and tools.
A minimal PyTorch re-implementation of AlphaFold2's model & training
physics-informed neural network based method for solving single-cell population dynamics
LLM-powered personalized daily lists of scientific papers
Python package with helper tools for the nf-core community.
Filtering and trimming of long read sequencing data
Single Cell Trajectory Representation Metrics
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
🤗 Transformers: the model-definition framework for state-of-the-art machine learning models in text, vision, audio, and multimodal models, for both inference and training.
RustyNum: A NumPy Alternative powered by Rust’s Portable SIMD
Earl Grey: A fully automated TE curation and annotation pipeline
A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling
Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core …
Google Workspace CLI — one command-line tool for Drive, Gmail, Calendar, Sheets, Docs, Chat, Admin, and more. Dynamically built from Google Discovery Service. Includes AI agent skills.
Identification of differential RNA modifications from nanopore direct RNA sequencing
Empowering everyone to build reliable and efficient software.
Sample representation benchmark for single-cell data
Search and display cells in foundation model embedding space
Structural variation caller using third generation sequencing
Ralph is an autonomous AI agent loop that runs repeatedly until all PRD items are complete.