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uromi06/README.md

Urmi Banner

👋 Hi, I’m Urmi!

🎓 Biomedical Engineer focused on advancing AI-driven medical imaging and clinically meaningful healthcare technology. 🔬 I develop and evaluate deep learning pipelines for explainable diagnosis, MRI analysis, and quantitative biomarker estimation.


🛠️ Technical Skills

Programming & Data Science

Python

PyTorch

NumPy

TensorFlow

Medical Imaging & Viz Tools

FSL

MeVisLab

MRtrix3

ParaView


📂 Research Projects

  • Built an end-to-end PyTorch pipeline for pediatric pneumonia detection from chest X-rays using a fine-tuned ResNet-18 backbone.
  • Achieved AUROC = 0.979, AUPRC = 0.985, with Sensitivity = 0.997 (screening) and Precision = 0.94 (rule-in mode).
  • Applied Grad-CAM visualizations to highlight pulmonary opacities, ensuring transparency and clinical interpretability.
  • Implemented temperature scaling and Youden’s J threshold tuning for probability calibration and operating-point flexibility.
  • Emphasized explainability, robust evaluation, and reproducible design for research-grade medical imaging AI.

  • Built a 3D U-Net conditional GAN to synthesize CMRO₂ maps from multimodal quantitative MRI (CBV, CBF, T2, T2*).
  • Preprocessing included GM masking, MNI152 resampling, and normalization.
  • Achieved high accuracy with all modalities (MSE ~0.0007, SSIM ~0.92, Pearson r ~0.95).
  • Demonstrated that vascular modalities (CBV & CBF) are essential for reliable CMRO₂ estimation.


  • Co-developed SugarIQ, an AI-enabled diabetes management platform built in 48 hours, featuring real-time patient monitoring, health trend visualization, medication tracking, and AWS-powered live consultation workflows (Transcribe Medical).
  • Contributed to synthetic data generation and patient modeling using BRFSS health indicators, enabling realistic patient datasets for analysis; platform built with React + TypeScript, AWS Lambda, API Gateway, S3, and Python-based data engineering.

“Advancing healthcare through imaging, AI, and biomedical engineering.”

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  1. chestxray-xai chestxray-xai Public

    Pneumonia detection from pediatric chest X-rays with explainable AI (Grad-CAM).

    Python 1

  2. CMRO2-Project-Public CMRO2-Project-Public Public

    Public overview of a deep learning pipeline for CMRO₂ synthesis from multimodal qMRI data using a 3D U-Net conditional GAN.

  3. sugariq-diabetes-management-platform sugariq-diabetes-management-platform Public

    Forked from bennihz/sugariq-diabetes-management-platform

    🏆 Winner of Healthcare Hackathon Bayern 2025 - Diabetes management platform with AI-powered insights

    TypeScript

  4. Mitigating-Shortcut-Learning-for-Medical-Imaging Mitigating-Shortcut-Learning-for-Medical-Imaging Public

    Forked from e-pet/cxr-shortcut-hackathon

    UBRA Hackathon repo on mitigating shortcut learning in medical chest X-ray pneumothorax models

    Python