This project is created by the Hao Lab at the Department of Chemistry & Biochemistry, University of Maryland, College Park, MD. This project aims to provide contaminant protein FASTA and spectral l…

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Quant proteomics as practiced at Lehtiö lab for NF-core

A proteomics pipeline for labelfree analysis using quandenser and triqler

Proteomics nextflow labelcheck pipeline with report

Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

Proteomics label-free quantification (LFQ) analysis pipeline

A small example pipeline used to test new nf-core infrastructure and common code.

nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.

Workflow management with Nextflow and nf-core

Code and files for the main nf-core website.

Test data to be used for automated testing with the nf-core pipelines

Python package with helper tools for the nf-core community.