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vd4mmind
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STAR
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Commits on Apr 29, 2016
Update README.md
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Commits on Apr 18, 2016
Compiled executables
alexdobin
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Implemented --outSAMfilter KeepAllAddedReferences option which will keep all alignments to the added references.
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Commits on Apr 13, 2016
Merge pull request #119 from smoe/debian/compilationstuff
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Merge pull request #118 from smoe/debian/mips_shm_noreserve
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Merge pull request #117 from smoe/bikeshedding
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Commits on Mar 4, 2016
More threads safe chunks concatenation for Unmapped Fastx option.
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Commits on Mar 3, 2016
Implemented --outTmpKeep All option to keep the temporary files. Implemented --alignEndsProtrude option to control output of alignments with protruding ends.
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Avoiding issues with later compilers - debian patch
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Fix compilation on MIPS - debian patch
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Presumably complete transition to lc after ...
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Commits on Mar 2, 2016
Removed submodule STAR-Fusion
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Commits on Feb 25, 2016
Recompiled binaries.
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Merge branch 'smoe-bikeshedding'
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Merge branch 'bikeshedding' of https://github.com/smoe/STAR into smoe-bikeshedding
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Added Extend5pOfReads12 option to parametersDefault.
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Final optical treat in sjdbBuildIndex.cpp
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optics in sjdbInsertJunctions.cpp
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optics in Genome_insertSequences.cpp
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More optical refinements - now in loadGTF
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More optical refinements
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Merge pull request #115 from smoe/bikeshedding
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deciding for lower case in status msg
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deciding for lower case for the sake of consistency
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Commits on Feb 24, 2016
Implemented --alignEndsType Extend5pOfReads12 option for full extension of 5' ends of both mates.
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Eliminates compilation warnings in ReadAlign_alignBAM.cpp
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Commits on Feb 23, 2016
Increased maximum read length to 650.
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Commits on Feb 18, 2016
Removed trailing white space from all source files.
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Commits on Jan 29, 2016
Fixed a bug that caused output of unmapped mates for single end alignments even with --outSAMunmapped None .
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Commits on Jan 22, 2016
Merge pull request #105 from mschilli87/mschilli87-typo_fix
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Merge pull request #106 from arahuja/patch-1
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2.5.1b
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Fixed a bug in signal generation with --outWigType introduced in 2.5.1a
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Update README.md
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Commits on Jan 21, 2016
fixed typo in sjdbGTFchrPrefix description
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