🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables

Make Picrust2 Output Analysis and Visualization Easier

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生信爱好者周刊（每周日发布）

A curated list of awesome Bioinformatics libraries and software.

Variational autoencoder for metagenomic binning

A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis by using GATK and Sentieon. 一个基于 GATK 和 Sentieon 的简易且全面的 W…

Genome browser and variant annotation

A scalable high-throughput metabolic and biogeochemical functional trait profiler

🔬A library of JavaScript components to represent biological data

Web tool for database management

🐞 Convert NCBI taxonomy dump into lineages

本项目将《动手学深度学习》(Dive into Deep Learning)原书中的MXNet实现改为PyTorch实现。

Open source code for AlphaFold 2.

Long-read mock community experiments

Short Read Sequence Typing for Bacterial Pathogens

Segmented HAPlotype Estimation and Imputation Tool

Plotting scripts for long read sequencing data

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

A single molecule sequence assembler for genomes large and small.

qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

SequenceGenie

Pathogen NGS Documentary

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904

All Algorithms implemented in Python

Python - 100天从新手到大师