Simple oligo analysis and primer design

PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs a…

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

A fast multiple sequence alignment program.

R package which integrating R and Julia

A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence

Bayesian analysis of genomic sequence data under the multispecies coalescent model

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

EasyCodeML: A visual tool for analysis of selection using CodeML

PHAST

Julia workshop for Data Science

Align multiple amino acid or nucleotide sequences.

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Bayesian molecular clock dating tutorial with genome-scale datasets

Visualize and perform a multitude of operations on newick files

A multi-algorithmic framework for phylogenetic inference

design common and specific primer for LAMP using the whole genome

Massively parallel multidimensional scaling

CONSEL: for assessing the confidence of phylogenetic tree selection

Automatically exported from code.google.com/p/proteinevolver

Inference of the Distribution of Fitness effects of new mutations with Maximum Likelihood

Detecting molecular basis of phenotypic convergnece

Next Generation Sequence Mapper

A tool to predicting the specificity of T Cell Receptor optimized with Swarm Intelligence

PAML's Codeml with Smoothed Bootstrap Aggregation (SBA) Support

Inference of correlated evolution on phylogenetic trees

Conversion of BGI-sequenced headers of FASTQ records to Illumina-compatible ones.

Disease outbreak reconstruction from epidemiological and genetic data