global-health

The most popular open source electronic health records and medical practice management solution.

Monorepo that holds all of HospitalRun's v2 projects.

ODK Collect is an Android app for filling out forms. It's been used to collect billions of data points in challenging environments around the world. Contribute and make the world a better place! ✨📋✨

The Android FHIR SDK is a set of Kotlin libraries for building offline-capable, mobile-first healthcare applications using the HL7® FHIR® standard on Android.

Rapid large-scale prokaryote pan genome analysis

Finds SNP sites from a multi-FASTA alignment file

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A tool to circularize genome assemblies

OpenELIS Global — open-source Laboratory Information System (LIS/LIMS) for clinical and public-health labs in 25+ countries. Java/Spring + React (Carbon), FHIR R4 native, Docker.

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

A collection of tools for extracting FHIR resources and analytics services on top of that data.

Unified COVID-19 Dataset

Antimicrobial Resistance Identification By Assembly

Get assembly statistics from FASTA and FASTQ files

ODK Build is a drag-and-drop form designer for ODK XForms. Thousands of users around the world depend on it for their data collection campaigns. Contribute and make the world a better place! ✨📝✨

A generic proxy server for applying access-control policies for a FHIR-store.

Infectious Disease Sequencing Platform

Python3 scripts to manipulate FASTA and FASTQ files

OpenLMIS v3+ Reference Distribution. Last mile health commodity information system.