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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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<link rel="stylesheet" type="text/css" href="http://fonts.googleapis.com/css?family=Open+Sans">
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<title>Volodymyr Minin's Software</title>
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<body>
<div class="row">
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<ul id="homebar">
<li>Volodymyr M. Minin</li>
</ul>
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<ul id="navbar">
<li><a href="index.html">Main</a></li>
<li><a href="research.html">Research</a></li>
<li class="active"><a href="software.html">Software</a></li>
<li><a href="mentoring.html">Mentoring</a></li>
<li><a href="teaching.html">Teaching</a></li>
<li><a href="https://github.com/vnminin/stoch_mod_journal_club" target="_blank">Group Meetings</a></li>
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When my collaborators and I develop new statistical methodology, we make the code implementing
the methodology publicly available.
So nearly all methodological papers listed on the <a href="research.html">Research</a> page have a link to accompanying software.
Most of these software packages are not designed to be super user friendly,
but rather are there for reproducibility purposes.
<p>
User-oriented software:
<ul>
<li> <code>phylodyn</code>: R package for estimating effective population size changes from gene genealogies.
Available on <a href="https://cran.r-project.org/web/packages/phylodyn/index.html">CRAN</a> and
<a href="https://github.com/mdkarcher/phylodyn">github</a>.
</ul>
<br><br><br>
Last modified: May, 2017
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