The GEP-Powered Self-Evolution Engine for AI Agents. Genome Evolution Protocol. | evomap.ai

FastOMA is a scalable software package to infer orthology relationship.

A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the q…

fork of the GPU genome aligner

An agentic skills framework & software development methodology that works.

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …

Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/

High performance, multi-platform VNC client and server

Quasar Framework - Build high-performance VueJS user interfaces in record time

C/C++ Performance Profiler

Uniform Manifold Approximation and Projection

A high-performance, concurrent hash table

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

✂️ ⚡ Rapid haploid variant calling and core genome alignment

software tools for haplotype assembly from sequence data

A fast, scalable, and accurate local ancestry method.

Fast and accurate in silico inference of HLA genotypes from RNA-seq

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

microsatellite instability detection using tumor only or paired tumor-normal data

HiC for copy Number variation and Translocation detection

Deep learning based processing of Atac-seq data

Use Garry Tan's exact Claude Code setup: 23 opinionated tools that serve as CEO, Designer, Eng Manager, Release Manager, Doc Engineer, and QA

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

😸 Soothing pastel theme for the high-spirited!

🍵 Soothing pastel theme for Gitea

Tools for plotting methylation data in various ways

The awesome document factory