Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

python implementation of the PAGE algorithm

LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model

Aligns short reads using dynamic seed size with strobemers

👻 Ghostty is a fast, feature-rich, and cross-platform terminal emulator that uses platform-native UI and GPU acceleration.

Make Any Website & Tool Your CLI. A universal CLI Hub and AI-native runtime. Transform any website, Electron app, or local binary into a standardized command-line interface. Built for AI Agents to …

Minimal VMM for multi-tenant dev shells and serverless

Clone any website with one command using AI coding agents

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

A scientific plotting library in Rust

fastVEP: High-performance Variant Effect Predictor in Rust

💥 Blazing fast terminal file manager written in Rust, based on async I/O.

The GEP-powered self-evolving engine for AI agents. Auditable evolution with Genes, Capsules, and Events. | evomap.ai

FastOMA is a scalable software package to infer orthology relationship.

A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the q…

fork of the GPU genome aligner

An agentic skills framework & software development methodology that works.

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and …

Bizard: A Biomedical Visualization Atlas. https://openbiox.github.io/Bizard/

High performance, multi-platform VNC client and server

Quasar Framework - Build high-performance VueJS user interfaces in record time

C/C++ Performance Profiler

Uniform Manifold Approximation and Projection

A high-performance, concurrent hash table

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

✂️ ⚡ Rapid haploid variant calling and core genome alignment