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deMEM Public
deMEM: a novel divide-and-conquer framework based on de Bruijn graph for scalable multiple sequence alignment
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staccato Public
Forked from rkuchumov/staccatoC++11 Work-Stealing Task Scheduler
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TSTA Public
Forked from bxskdh/TSTApairwise and multiple sequence alignment accelerated by simd and threads
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pbsim2 Public
Forked from yukiteruono/pbsim2PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
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FORAlign Public
FORAlign: Accelerating gap-affine DNA pairwise sequence alignment using FOR-blocks based on FOur Russians approach with linear space complexity
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SplitMEM_BWT Public
SplitMEM submodule for deMEM
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sdsl-lite-all-in-one Public
Parallel suffix array calculation, used in SplitMEM
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SSW Public
Forked from mengyao/Complete-Striped-Smith-Waterman-LibraryComplete Striped Smith Waterman Library with Windows & Linux
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pthread-win32 Public
Forked from GerHobbelt/pthread-win32Cloned for only call / cvs-import of pthread-win32 + local tweaks (including MSVC2008 - MSVC2022 project files)
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abPOA Public
Forked from yangao07/abPOAabPOA: an SIMD-based C library for fast partial order alignment using adaptive band
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syzoj Public archive
Forked from syzoj/syzoj一个用于算法竞赛的在线评测系统。An online judge system for algorithm competition.
JavaScript GNU Affero General Public License v3.0 UpdatedAug 2, 2023 -
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bzip2 Public
cloned for only call / please see gitlab.com/bzip2/bzip2 for more information
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qscore Public
Forked from rcedgar/qscoreCompares a multiple alignment with a reference and reports accuracy scores.
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parallel-suffixArray Public archive
parallel suffix Array implementation: parallel DC3 & ParallelRange
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