A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Java utilities for Bioinformatics

ES数据导出工具，ES data export tool，elasticsearch data export tool，elasticsearch数据导出到文件，elasticsearch数据导出到数据库，目前已支持全部的6.x的版本,后续跟进更低的版本。

AQUAS TF and histone ChIP-seq pipeline

MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities

TGS scaffolding

MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapping data and can be used for in depth exploration of hybrid …