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rice Public
The Riemannian Causal Embedding (RiCE) algorithm for discovering networks from time series
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cphy Public
Class materials for computational physics course
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dynGENIE3 Public
Forked from vahuynh/dynGENIE3Semi-parametric approach for the inference of gene regulatory networks from time series of expression data
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SWING Public
Forked from bagherilab/SWINGSliding Window Inference for Network Generation
Python UpdatedJun 10, 2025 -
illotka Public
Simulate the ill-conditioned Lotka-Volterra model
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pypdb Public
A Python API for the RCSB Protein Data Bank (PDB)
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howto Public
How to do various tricky computer things
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SCODE Public
Forked from hmatsu1226/SCODESCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
R UpdatedJan 1, 2025 -
shrec Public
Reconstructing shared causal drivers from noisy time series
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suffix-tree Public
Forked from cceh/suffix-treeA Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.
Python GNU General Public License v3.0 UpdatedNov 5, 2023 -
flowtrace_python Public
Python implementation of time-resolved flow tracing.
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TNS-Pull-Request-Practice Public
Forked from mgienow/TNS-Pull-Request-PracticeA public repository and resource for practicing pull requests!
HTML UpdatedSep 8, 2023 -
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photography Public
Forked from rampatra/photographyA jekyll website for photographers
JavaScript GNU General Public License v3.0 UpdatedAug 20, 2023 -
JuliaDynamics Public
Forked from JuliaDynamics/JuliaDynamicsWebsite for JuliaDynamics and various resources, like notebooks, videos, etc.
Jupyter Notebook UpdatedDec 29, 2022 -
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Data-Science-Cheatsheet Public
Forked from aaronwangy/Data-Science-CheatsheetA helpful 5-page machine learning cheatsheet to assist with exam reviews, interview prep, and anything in-between.
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kurep_paper Public
Code to create avalanches in a repulsive oscillator model.
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fnn Public
Embed strange attractors using a regularizer for autoencoders
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nolds Public
Forked from CSchoel/noldsNonlinear measures for dynamical systems (based on one-dimensional time series)
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pypdb_legacy Public
An archival version of the pypdb repository, before a significant refactoring due to upstream API changes.
Python MIT License UpdatedNov 8, 2020
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