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.idea
.idea
 
 
_static
_static
 
 
_templates
_templates
 
 
amazon
amazon
 
 
figures
figures
 
 
files
files
 
 
week3
week3
 
 
.gitignore
.gitignore
 
 
CTB-github.rst
CTB-github.rst
 
 
ChandlerDeSeq.rst
ChandlerDeSeq.rst
 
 
DataFiles.rst
DataFiles.rst
 
 
DownloadAndTest.rst
DownloadAndTest.rst
 
 
GenomicsShell.rst
GenomicsShell.rst
 
 
IntroductionControlFlowR.md
IntroductionControlFlowR.md
 
 
IntroductionControlFlowR.rst
IntroductionControlFlowR.rst
 
 
MacManesTrimming.rst
MacManesTrimming.rst
 
 
MacManes_BUSCO.rst
MacManes_BUSCO.rst
 
 
MacManes_Trinity.rst
MacManes_Trinity.rst
 
 
MacManes_UNIX.rst
MacManes_UNIX.rst
 
 
MacManes_adventure.rst
MacManes_adventure.rst
 
 
MacManes_kallisto.rst
MacManes_kallisto.rst
 
 
Makefile
Makefile
 
 
README.md
README.md
 
 
R_Introductory_tutorial_2015.md
R_Introductory_tutorial_2015.md
 
 
Read_&_munge_NGS_tutorial.R
Read_&_munge_NGS_tutorial.R
 
 
Rintro.rst
Rintro.rst
 
 
SOAPdeNovoTrans_count_eXpress.rst
SOAPdeNovoTrans_count_eXpress.rst
 
 
WorkingWithArchives.rst
WorkingWithArchives.rst
 
 
analyzing_drosophila_htseq.rst
analyzing_drosophila_htseq.rst
 
 
analyzing_nanopore_data.rst
analyzing_nanopore_data.rst
 
 
assembling-ecoli.rst
assembling-ecoli.rst
 
 
automation.rst
automation.rst
 
 
bcl2fastq.rst
bcl2fastq.rst
 
 
code-of-conduct.rst
code-of-conduct.rst
 
 
conf.py
conf.py
 
 
day1.rst
day1.rst
 
 
day2.rst
day2.rst
 
 
drosophila_htseq.R
drosophila_htseq.R
 
 
drosophila_rnaseq1.rst
drosophila_rnaseq1.rst
 
 
drosophila_rnaseq_bwa_htseq.rst
drosophila_rnaseq_bwa_htseq.rst
 
 
drosophila_rnaseq_counting_htseq.rst
drosophila_rnaseq_counting_htseq.rst
 
 
eel-pond.rst
eel-pond.rst
 
 
functional_annotation.rst
functional_annotation.rst
 
 
genome-comparison-and-phylogeny.rst
genome-comparison-and-phylogeny.rst
 
 
genome_tophat_htseq_counts.zip
genome_tophat_htseq_counts.zip
 
 
git-koans.rst
git-koans.rst
 
 
howe-mgrast.rst
howe-mgrast.rst
 
 
howe-ncbi.rst
howe-ncbi.rst
 
 
index.rst
index.rst
 
 
instructors-guide.rst
instructors-guide.rst
 
 
interval-analysis-and-visualization.rst
interval-analysis-and-visualization.rst
 
 
kmers-etc.rst
kmers-etc.rst
 
 
long-read.rst
long-read.rst
 
 
mount_chris_snapshot.rst
mount_chris_snapshot.rst
 
 
prokka_genome_annotation.rst
prokka_genome_annotation.rst
 
 
rnaseq_mapping_to_transcritome_bwa_htseq_counts.tar.gz
rnaseq_mapping_to_transcritome_bwa_htseq_counts.tar.gz
 
 
running-command-line-blast.rst
running-command-line-blast.rst
 
 
sam-format-tutorial.rst
sam-format-tutorial.rst
 
 
short-read-quality-evaluation-ctb.rst
short-read-quality-evaluation-ctb.rst
 
 
short-read-quality-evaluation.rst
short-read-quality-evaluation.rst
 
 
transrate.rst
transrate.rst
 
 
variant.rst
variant.rst
 
 
vcf_exploration.md
vcf_exploration.md
 
 
vcf_exploration.rst
vcf_exploration.rst
 
 
week3.rst
week3.rst
 
 

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Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

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