map and call next generation genomic sequencing

☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!

Make personal protein databases using next generation sequencing data.

Extremely fast Variant Call Format annotation

Natural Language Search and Analysis of High Dimensional Genomic Data

GraphQL support for PostgreSQL

OpenSpecimen is an open source biobanking/biorepository management software developed by Krishagni Solutions (India).

An object oriented wrapper and tooling for the OpenSpecimen API, written in Python

Software published from our group for public use.

Haplotype phasing software

Tunable Approach for Median Polish of Ratio -- Biological Abundance Batch Effect Removal

Go library for reading and writing XLSX files.

Fast key-value DB in Go.

a tool for backing up your data using rsync (if you want to get help, use https://lists.sourceforge.net/lists/listinfo/rsnapshot-discuss)

Rsync-based OSX-like time machine for Linux, MacOS and BSD for atomic and resumable local and remote backups

ShellCheck, a static analysis tool for shell scripts

Automatically generate Go test boilerplate from your source code.

R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

Genome-wide Efficient Mixed Model Association

Make personal protein databases using next generation sequencing data.

LD Score Regression (LDSC)

Multiplex Primer Design

Boost LaTeX typesetting efficiency with preview, compile, autocomplete, colorize, and more.

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

A collection of useful, performant, and threadsafe Go datastructures.

Specification for the Workflow Description Language (WDL).

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources