Code for "Closing the Train-Test Gap in World Models for Gradient-Based Planning"

Lightweight coding agent that runs in your terminal

AIND pipeline for processing extracellular electrophysiology data

Code for Slow Transition to Low-Dimensional Chaos in Heavy-Tailed Recurrent Neural Networks (NeurIPS 2025)

The official implementation for [NeurIPS2025 Oral] Gated Attention for Large Language Models: Non-linearity, Sparsity, and Attention-Sink-Free

A simple GUI for automatic and manual alignment across calcium imaging sessions.

Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)

Fast, volumetric cell detection. In development.

A stochastic model that captures non-random trends in local connectivity

a generalist algorithm for cellular segmentation

Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

Use Google Sheets as your application's reporting tool

Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.

Beyond vividness: Content analysis of induced hallucinations reveals the hidden structure of individual differences in visual imagery

Lean 4 programming language and theorem prover

Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals

Simulation code for Hashemi, S., and Shafiee, S., and Tetzlaff, C. (2025)."Robust Input Disentanglement Through Dendritic Calcium-Mediated Action Potentials"

All code and intermediate data to reproduce results in our preprint, 'Unifying concepts in information-theoretic time-series analysis'

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning a…

Analysis tools for neural timeseries data collected during event-based behavior or stimuli

A Pipeline For Subcellular Calcium Imaging Analysis

The Chalmers Auralization Toolbox

Tiny data-over-sound library