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5 stars written in R
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Inferring CNV from Single-Cell RNA-Seq

R 662 179 Updated Nov 14, 2025

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

R 205 99 Updated Mar 20, 2024

Robust and efficient workflows using a simple language agnostic approach

R 92 10 Updated Feb 14, 2025

MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

R 1 Updated Dec 5, 2019

Dirichlet Process based methods for subclonal reconstruction of tumours

R 1 Updated Jan 10, 2020