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1. flyest flyest Public

   Oxford Nanopore Technologies (ONT) long-read assembly polishing tool

   Shell 7

2. convict convict Public

   Copy Number Variant Quantification Tool

   Python 3 1

3. dviont dviont Public

   Variant calling pipeline designed for Q20+ ONT long-reads

   Perl 12 1

4. misc_scripts misc_scripts Public

   Miscellaneous scripts to be used locally or on HPC

   Python

5. misfit misfit Public

   The Mutation Identification in Sequences and Frameshift/ Indel Tracking (MISFIT)

   Python

6. amr-struct amr-struct Public

   Long-read assembly + read AMRFinderPlus wrapper tool that estimates gene copy number and genomic context

   1