Prodigal Gene Prediction Software

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Automatically exported from code.google.com/p/cdhit

Statistical analysis for sparse high-throughput sequencing

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples

Easy Metagenome Pipeline

🐪 The Perl programming language

Interactively explore metagenomes and more from a web browser.

Next generation sequencing reads de novo assembler.

Genome assembly evaluation tool

Rapid comparison and dereplication of genomes

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

Ultra-fast and memory-efficient (meta-)genome assembler