Starred repositories
Learning materials, files and codes for bioinformatics
A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
[CVPR'24] Group Anything with Radiance Fields
Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization
UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
Ultrafast and powerful eGene identification method
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest and (2) to construct cellular modules which imply disease-sp…
Single-cell multi-omics profiling reveals the comprehensive epigenetic regulatory features of clear cell renal cell carcinoma
Molecular interactions inference from single-cell multi-omics data
Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic And Transcriptome Profiling"
MRAgent is an LLM-based tool that automates Mendelian randomization analysis, reducing manual effort by autonomously scanning literature, selecting GWAS data, and generating comprehensive reports, …
A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.