BWK awk modified for biological data

Official home of genome aligner based upon notion of Cactus graphs

UCSC Genome Browser source. "beta" is released version / "master" is testing.

Next generation sequencing reads de novo assembler.

Program for aligning DNA sequences, a pairwise aligner.

a lightweight bam file depth statistical tool

Git repository for FASTA36 sequence comparison software

The MARVEL assembler

PHAST

Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)

knowledge-based genotyping of cancer hotspots from the tumor BAM files

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)