Publically available alignments (and trees) from published dN/dS analyses

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Efficient SpGEMM on GPU using CUDA and CSR

The simulator for SPADA, an SpGEMM accelerator with adaptive dataflow

Collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

Source code of the paper "OpSparse: a Highly Optimized Framework for Sparse General Matrix Multiplication on GPUs"

Template Repo for the bio-protocol eBook: Bioinformatics Recipes for Plant Genomics - data, code and workflows

DeepSkyStacker

Ultrafast Sample Placement on Existing Trees

Official repo for the #tidytuesday project

Julia code in Kenneth Lange's Algorithms from THE BOOK

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

Fast and differentiable implementations of matrix exponentials, Krylov exponential matrix-vector multiplications ("expmv"), KIOPS, ExpoKit functions, and more. All your exponential needs in SciML f…

Agent-Based Model of SARS-CoV-2-Induced Lung Damage

List of software packages for multi-omics analysis

Implementations of SIMD instruction sets for systems which don't natively support them.

A header-only C++ library for large scale eigenvalue problems

Julia implementations of basic potential energy landscapes for testing sampling, optimization, etc.

A collection of basic routines for Molecular Dynamics simulations implemented in Julia

Move and resize windows on macOS with keyboard shortcuts and snap areas

Companion analyses with Bastide et al. 2020.

OpenMendel tutorials for Lange's Symposium Programming Workshop

Inaugural Lange Symposium and Software Workshop, Feb 21-22, 2020

Robust, modular and efficient implementation of advanced Hamiltonian Monte Carlo algorithms

Implementation of the EM algorithm for the detection of shifts in a phylogeny.

Tuned OpenCL BLAS

Python PDF Parser (Not actively maintained). Check out pdfminer.six.