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1. Platelet-FM-Benchmark Platelet-FM-Benchmark Public

   Platelet Foundation Model Benchmark — Comparing STATE, UCE, scGPT, Geneformer, and TranscriptFormer for predicting infection severity (COVID-19, Sepsis) from single-cell platelet transcriptomics. S…

   Python

2. spatial-kidney-rejection spatial-kidney-rejection Public

   This project extends our published research in Frontiers in Immunology (Data: GSE304669) with advanced computational methods including spatial neighborhood analysis, cell-cell communication inferen…

   Jupyter Notebook

3. PlateletSubpop-ML-ScTranscriptomics PlateletSubpop-ML-ScTranscriptomics Public

   Machine learning and single-cell transcriptomic analysis framework for characterizing platelet subpopulations in COVID-19, Sepsis, and SLE, revealing novel prognostic biomarkers and therapeutic tar…

   R 3

4. sepsis-scrna-dynamics sepsis-scrna-dynamics Public

   Analysis code for the paper "Dynamic changes in human single-cell transcriptional signatures during fatal sepsis" (Qiu et al., 2021)

   R 1

5. BioML-Cancer-Genomics-Portfolio BioML-Cancer-Genomics-Portfolio Public

   Bioinformatics portfolio showcasing advanced machine learning and genomic analysis projects. Features a cervical cancer prediction model using multiple ML algorithms, a Hidden Markov Model implemen…

   Jupyter Notebook 1