Predicting small molecule and RNA target interactions using deep neural networks (Nature Biotechnology, 2025)

Efficient, parallel compression for terabyte-scale data

Base-conversion Sequencing Aligner

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

code and source data for de novo design of Kemp elimination paper

BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25

Windows Subsystem for Linux

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

A high efficiency binary format for sequencing data

🧬 A general pipeline for data processing of 3 letter sequencing methods.

Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library

Fetch an entire site and use it as an MCP Server

[CVPR 2022 Oral] Towards Layer-wise Image Vectorization

A high-performance implementation of Wilkinson formulas for Python.

Genome modeling and design across all domains of life

Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical…

Tidy Plots for Scientific Papers

JSON for Classic C++

AlphaFold 3 inference pipeline.

🧪 m6A-CAM-seq

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.

The Modular Platform (includes MAX & Mojo)

✂️ Trim sequencing adapters from NGS data automatically

🧪 Ultrafast bisulfite

Simple pileup-based variant caller

LLM training in simple, raw C/CUDA