Stars
Open source code for AlphaFold 2.
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Making Protein folding accessible to all!
Single-cell analysis in Python. Scales to >100M cells.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
MMseqs2: ultra fast and sensitive search and clustering suite
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…
Unix, R and python tools for genomics and data science
resources for learning bioinformatics
📊 A universal enrichment tool for interpreting omics data
Applied Computational Genomics Course at UU: Spring 2020
RNAseq analysis notes from Ming Tang
A list of interesting genome browser and genome visualization programs
🎄Visualization and annotation of phylogenetic trees
De novo assembler for single molecule sequencing reads using repeat graphs
Python library to facilitate genome assembly, annotation, and comparative genomics
python module to plot beautiful and highly customizable genome browser tracks
ChIP-seq analysis notes from Ming Tang