A tool for Racon polishing of miniasm assemblies

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Oxford Nanopore's Basecaller

A tool for generating consensus long-read assemblies for bacterial genomes

The second version of the Kraken taxonomic sequence classification system

Tools (written in C using htslib) for manipulating next-generation sequencing data

A versatile pairwise aligner for genomic and spliced nucleotide sequences

De novo assembler for single molecule sequencing reads using repeat graphs