Simple LSD and affinity graph computation

Marching Cubes & Mesh Simplification on multi-label 3D images.

3D U-Net model for volumetric semantic segmentation written in pytorch

Training scripts and models for Prism paper

A curated list of resources for 3D segmentation of neurites in EM images

Block-wise operations for large nD volumes

UniSPAC: A Unified Segmentation framework for Proofreading and Annotation in Connectomics

A course for brains interested in brains (not tools interested in tools)

serve Zarr datasets via HTTP

Collection of connectomic papers and datasets.

BANIS: Baseline for Affinity-based Neuron Instance Segmentation

Comprehensive platform for automated large-scale connectomics. Segmentation and Detection models built upon Funke lab's algorithms.