Commits

Commits on Apr 26, 2018

Fixed a bug that accidentally turns on --peOverlap* option and causes seg-fault.
alexdobin
committed
36fffb3

Commits on Apr 23, 2018

2.6.0a
alexdobin
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2b95e47
2.6.0a
alexdobin
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fff8d4d
Mac executables
alexdobin
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4210432
Manual, README, RELEASEnotes, CHANGES
alexdobin
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6671dfb
Recompiled Linux executables.
alexdobin
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cf3c762
WASP filtering switched off for the 1st pass of the 2-pass mapping.
alexdobin
committed
68724db

Commits on Apr 20, 2018

--chimScoreJunctionNonGTAG is now added to chimeric score for thresholding with --chimScoreMin and --chimScoreDropMax; large negative number will prohibit non-GTAG chimeric junctions. Fixed a bug i…
alexdobin
committed
fa3e24c

Commits on Apr 11, 2018

Merged master into var. Preparing for 2.6.0
alexdobin
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ca294dd
Cleaned up compilation warnings.
alexdobin
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bd9f250

Commits on Apr 10, 2018

Commits on Apr 6, 2018

Commits on Mar 30, 2018

Fixed problems with merged PE chimeric output.
alexdobin
committed
f39d718

Commits on Mar 26, 2018

Fixed bugs in the algorithm that finds the best alignment.
alexdobin
committed
97f42b9
Fixed a bug in ReadAlign_stitchPieces.cpp.
alexdobin
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7125678

Commits on Mar 22, 2018

Fixed a bug in the overlapping mates algorithm related to protruding ends of the mates.
alexdobin
committed
ff7cf4e

Commits on Mar 19, 2018

Fixed a bug in the overlapping mates algorithm.
alexdobin
committed
4fa64ba

Commits on Mar 13, 2018

Fixed some issues with the overlapping mates algorithm.
alexdobin
committed
70f76b5
Fixed some issues with the overlapping mates algorithm.
alexdobin
committed
7783243
Fixed some issues with the overlapping mates algorithm.
alexdobin
committed
021c016

Commits on Feb 25, 2018

Fixed a problem in the chimeric detection algorithm for overlapping PE reads.
alexdobin
committed
b5ddc47

Commits on Feb 9, 2018

2.5.4b
alexdobin
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5dbd58c
2.5.4b
alexdobin
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c391dbb

Commits on Jan 29, 2018

Implemented merging and re-mapping for overlapping mates. To control it, use --peOverlapNbasesMin and --peOverlapMMp oprions.
alexdobin
committed
bcb82d3

Commits on Jan 26, 2018

spelling fixes
satta
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29d0f8e

Commits on Jan 25, 2018

Merged 2.5.4a master into var.
alexdobin
committed
db4f1d5
Fixed a problem with non-default --sjdbOverhang genome generation.
alexdobin
committed
7701cf6
Typos fixed in CHANGES.md
alexdobin
committed
35e63db