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vimplant

Here we provide code for preprocessing of 7T retinotopic maps (obtained from the Human Connectome Project) and to virtually simulate implantations of a cortical visual prosthesis.

Link to preprint: https://www.biorxiv.org/content/10.1101/2024.03.05.583489v1.abstract

Prerequisites

  • Microsoft Visual C++ 14.0
  • Windows 10 SDK

Installation

conda create --name vimplant python=3.10

conda install -c conda-forge jupyterlab

pip install numpy==1.23.5 scikit-optimize nibabel mathutils trimesh scipy matplotlib rtree

FromAitor Astudillo from the SURFSARA helpdesk:
"This work was carried out on the Dutch national e-infrastructure with the support of SURF Cooperative."

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Here we provide code for preprocessing of 7T retinotopic maps (obtained from the Human Connectome Project) and to virtually simulate implantations of a cortical visual prosthesis. FromAitor Astudillo from the SURFSARA helpdesk: "This work was carried out on the Dutch national e-infrastructure with the support of SURF Cooperative."

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  • Jupyter Notebook 95.4%
  • Python 4.6%