A library for QC report based on MultiQC framework

Tutorial on large language models for genomics

Absolute quantification package based on quantms.io

Python bindings to access bruker mass spec data

Python client for PRIDE Archive Rest API.

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

PRIDE Resources Forum (https://github.com/PRIDE-Archive/pride-resources/discussions)

Single cell proteomics data processing

Filter a VCF to discard false positive variants

Tumor Immune Single-cell Hub

de Bruijn decoy generator

Covid19 - Dashboard for Cuba

Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

This is the development home of the workflow management system Snakemake. For general information, see

Harmonise GWAS summary statistics against a reference VCF

Workflows for processing summary statistics files for Open Targets Genetics

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…

Workflow to analyze the quality of mass spectrometry proteomics experiments based on multivariate quality control metrics.

A parser for Google Scholar, written in Python

A high quality UI Toolkit built on Vue.js 2.0

Flask REST API for Open Targets Platform

Lehtiö lab analysis workflows

Base Classes and Functions for Mass Spectrometry and Proteomics

A curated list of nextflow based pipelines

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

A DSL for data-driven computational pipelines