Various algorithms for analysing genomics data

Microsoft PowerToys is a collection of utilities that help you customize Windows and streamline everyday tasks

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

Scalable and flexible workflow orchestration platform that seamlessly unifies data, ML and analytics stacks.

🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

Universal workbench incorporating msdial, msfinder, and mrmprobs

The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other …

Official code repository for GATK versions 4 and up

Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-level taxonomic profiling (Bacteria, Archaea and Eukaryotes)…

180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering, alignment/VCF QC, capture array design, IGV/ DAS2/IGB/UCSC …

MGnify genome analysis pipeline

Data intensive science for everyone.

HemTools: a collection of NGS pipelines and bioinformatic analyses

Amplicon sequence processing workflow using QIIME 2 and Snakemake

web-based analysis tool for rare disease genomics

An open-source remote desktop application designed for self-hosting, as an alternative to TeamViewer.

A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data

repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

Efficient retrieval, download, and unification of genomic data from leading biodiversity databases

Amplicon sequencing analysis workflow using DADA2 and QIIME2

A modular annotation tool for genomic variants

An analysis and visualization platform for 'omics data

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

Short-read and long-read sequencing tools for diagnostics

Sequana: a set of Snakemake NGS pipelines

Whole exome sequencing pipeline for inherited diseases

VCF visualization interface