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Run macOS on QEMU/KVM. With OpenCore + Monterey + Ventura + Sonoma support now! Only commercial (paid) support is available now to avoid spammy issues. No Mac system is required.
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
A complete begineers guide to learn shell scripting from scratch which includes Videos, Practice scenarios and project idea.
🐳📊📚 Docker Images tracking the stable Galaxy releases.
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
DNA sequencing analysis notes from Ming Tang
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Making whole bacterial genome sequencing data analysis easy
MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
Bioinformatics analysis scripts, workflows, general code examples
This repository contains course materials from JAX-BD2K workshop.
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions for software installs.
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Mostly useful scripts and files for processing MiSeq amplicon data
Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
Collection of notes and scripts related to NGS
NIPT-human-genetics is a semi-automated workflow designed for the analysis of large-scale ultra-low-pass non-invasive prenatal test (NIPT) sequencing data in human genetic studies.
A reliable gap filling pipeline for draft genomes
A pipeline on WES(whole exome sequence) analysis, from data download to analysis
A methodological framework to conduct a calibrated gene-based rare variant association test by leveraging the genome aggregation database (gnomAD) as an external control dataset
Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers
Automated Pipeline for Variant/Haplotype Calling and Filtering