Central repository for biomolecular foundation models with shared trainers and pipeline components

RADseq workflow using STACKS

Reworked LDhat workflow of QuentinRougemont for slurm system.

Biological foundation modeling from molecular to genome scale

GNN trained to predict changes in thermodynamic stability for protein point mutants

ESMDynamic repo

VAE for protein interpretation and design

A generalized computational framework for biomolecular modeling.

FusionProt: Fusing Sequence and Structural Information for Unified Protein Representation Learning

Consensus Finder python implementation for mutating proteins

AlphaFold 3 inference pipeline.

An overview of all nanopack tools

PyTorch Tutorial for Deep Learning Researchers

A multi-thread tool for identifying DNA methylation motifs from Pacbio reads

Pipeline for the analysis of Pacbio data

CompArative GEne Cluster Analysis Toolbox

A python program to call methylation (m6A in DNA) from nanopore signal data

Research release basecalling models and configurations

Oxford Nanopore's Basecaller

Realtime base modification frequency tool

R package providing a tidy grammar of population genetics, facilitating the manipulation and analysis of large datasets of biallelic single nucleotide polymorphisms (SNPs).

ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.

interactive & hardware agnostic SDK for lab automation

An implementation of ESM2 in Equinox+JAX

Generating dynamic structures through physics-based sampling of trRosettaX2-predicted inter-residue geometries