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  • Mining the probiotics from metagenomic bins primary sequences using the language model

    MATLAB 5 Updated Mar 2, 2025
  • PlasGUN Public

    Gene prediction in plasmid metagenomic short reads using deep learning.

    5 GNU General Public License v3.0 Updated Oct 24, 2021
  • VirionLang Public

    Applying the language model to protein sequences improves the identification of prokaryotic virus virion protein.

    1 1 GNU General Public License v3.0 Updated Jul 19, 2021
  • VirionFinder: identify complete and partial phage virion proteins from virome data using the logo and biochemical properties of amino acids

    MATLAB 5 2 GNU General Public License v3.0 Updated May 31, 2021
  • DL-VM Public

    1 GNU General Public License v3.0 Updated May 12, 2021
  • PPR-Meta Public

    A tool for identifying phages and plasmids from metagenomic fragments using deep learning

    MATLAB 45 10 GNU Lesser General Public License v3.0 Updated Apr 13, 2021
  • Updated Feb 26, 2021
  • PlasTrans Public

    Identify the conjugative and mobilizable plasmid fragments in plasmidome using sequence signatures.

    MATLAB 2 GNU General Public License v3.0 Updated Nov 23, 2020