Search results

Using the -Az flags gives incorrect coverage information.

Status: Open.

#116 In 38/d4-format;

· peterpru opened on Oct 28, 2025

Possible unsound unsafe usage

Status: Open.

#115 In 38/d4-format;

· charlesxsh opened on Oct 24, 2025

d4tools create runs for hours on small bedgraph file

Status: Open.

#114 In 38/d4-format;

· Jakob37 opened on Jul 11, 2025

d4tools stat gives occasionally very large (incorrect) numbers

Status: Open.

#113 In 38/d4-format;

· Jakob37 opened on Jul 9, 2025

Ignore "chr" prefix when running stats using an intervals file

Status: Open.

#112 In 38/d4-format;

· northwestwitch opened on Mar 3, 2025

Memory Allocation error using d4tools view

Status: Open.

#111 In 38/d4-format;

· GaRa2901 opened on Feb 13, 2025

Static d4tools binary

Status: Open.

#110 In 38/d4-format;

· oyvinev opened on Feb 12, 2025

Computing the default denominator should adjust the dictionary range

Status: Open.

#109 In 38/d4-format;

· oyvinev opened on Feb 12, 2025

Explicitly setting default denominator does not propagate to builder

Status: Open.

#106 In 38/d4-format;

· oyvinev opened on Feb 11, 2025

Runaway default denominator

Status: Open.

#105 In 38/d4-format;

· oyvinev opened on Feb 11, 2025

Problem installing pyd4 with both pip and from the GitHub repo

Status: Open.

#104 In 38/d4-format;

· GaRa2901 opened on Feb 11, 2025

<code>d4tools create</code> should not count deletion parts of reads when calculation coverage.

Status: Open.

#99 In 38/d4-format;

· ghuls opened on Jan 23, 2025