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@GoekeLab

Göke Lab

Computational Transcriptomics - Third Generation Sequencing

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  1. bambu bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    R 259 28

  2. sg-nex-data sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    R 165 27

  3. m6anet m6anet Public

    Detection of m6A from direct RNA-Seq data

    Python 133 22

  4. xpore xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    Python 171 24

  5. awesome-nanopore awesome-nanopore Public

    A curated list of awesome nanopore analysis tools.

    330 60

  6. awesome-genomic-skills awesome-genomic-skills Public

    A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

    108 27

Repositories

Showing 10 of 23 repositories
  • bambu-pipe Public

    Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

    GoekeLab/bambu-pipe's past year of commit activity
    Nextflow 26 GPL-3.0 3 4 0 Updated Sep 23, 2026
  • awesome-genomic-skills Public

    A curated list of awesome genomics and bioinformatics agentic skills, MCPs and benchmarks for Claude Code, Copilot, Codex, Cursor, Gemini CLI, etc

    GoekeLab/awesome-genomic-skills's past year of commit activity
    108 CC0-1.0 27 0 5 Updated Sep 22, 2026
  • biocthis Public Forked from lcolladotor/biocthis

    Automate package and project setup for Bioconductor packages

    GoekeLab/biocthis's past year of commit activity
    R 0 18 0 0 Updated Sep 20, 2026
  • styler Public Forked from r-lib/styler

    Non-invasive pretty printing of R code

    GoekeLab/styler's past year of commit activity
    R 0 76 0 0 Updated Sep 20, 2026
  • S4Vectors Public Forked from Bioconductor/S4Vectors

    Foundation of vector-like and list-like containers in Bioconductor

    GoekeLab/S4Vectors's past year of commit activity
    R 0 23 0 0 Updated Sep 16, 2026
  • sg-nex-data Public

    Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

    GoekeLab/sg-nex-data's past year of commit activity
    R 165 27 11 0 Updated Sep 14, 2026
  • lintr Public Forked from r-lib/lintr

    Static Code Analysis for R

    GoekeLab/lintr's past year of commit activity
    R 0 207 0 0 Updated Sep 13, 2026
  • NanoporeRNASeq Public

    Nanopore RNASeq data

    GoekeLab/NanoporeRNASeq's past year of commit activity
    R 9 MIT 2 0 0 Updated Sep 4, 2026
  • bambu Public

    Reference-guided transcript discovery and quantification for long read RNA-Seq data

    GoekeLab/bambu's past year of commit activity
    R 259 GPL-3.0 28 55 3 Updated Sep 2, 2026
  • xpore Public

    Identification of differential RNA modifications from nanopore direct RNA sequencing

    GoekeLab/xpore's past year of commit activity
    Python 171 MIT 24 32 1 Updated Aug 25, 2026

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